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Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

by Dr. Tonya Cooksey, DVM on Jun 26 2025
This study compared the effects of probiotics versus autologous fecal microbiome transplantation (aFMT) on gut microbiome recovery after antibiotic use in mice and humans. Probiotics delayed gut microbiome and gene expression recovery, while aFMT resulted in a rapid and near-complete recovery. These findings suggest that probiotics may hinder post-antibiotic gut recovery, highlighting the need for alternative approaches like aFMT or personalized probiotics.